MatrixDB

Construction of tissue and disease-specific interaction networks

Fri, 2 Jul 2010 13:14:00 GMT

MatrixDB allows researchers to perform customized queries and to build tissue-specific and disease-specific interaction networks.

Links to OMIM, to UniGene and to the Human Protein Atlas databases

Fri, 2 Jul 2010 13:14:00 GMT

MatrixDB provides direct links to OMIM, to databases recapitulating data on mutations occurring in genes encoding extracellular proteins, to UniGene and to the Human Protein Atlas that shows expression and localization of proteins in a large variety of normal human tissues, cancer cells and cell lines.

Curation of SPARC (Secreted protein acidic and rich in cysteine) interactions, the elastic fiber interactome, the extracellular interactions of leucine-rich repeat receptors

Fri, 2 Jul 2010 13:14:00 GMT

The database integrates now additional interaction data, comprehensive extracellular datasets : the elastic fiber interactome (Cain et al., (2009) Mol Cell Proteomics 8:2715-2732), extracellular interactions of leucine-rich repeat receptors (Bushell et al., (2008) Genome Res. 18:622-630; Söllner et al., (2009) Genome Biol. 10:R99) and SPARC interactions

Curation of Matrix Biology, 2009 release

Fri, 2 Jul 2010 13:14:00 GMT

Papers published in Matrix Biology in 2009 have been curated and implemented into MatrixDB.

Tissue specific interactome construction

Tue, 2 Jun 2009 13:40:00 GMT

Tissue specific interaction networks can now be constructed using mRNA expression data (EST profiles) stored in UniGene.
EST (Expressed Sequence Tag) profiles are approximate gene expression inferred from EST count and the cDNA library source.

Curation of Matrix Biology, 2008 release

Fri, 24 Apr 2009 09:49:00 GMT

Papers published in Matrix Biology in 2008 have been curated and implemented into MatrixDB.

MatrixDB publication available

Mon, 19 Jan 2009 17:58:00 GMT

A manuscript describing MatrixDB has been accepted for publication in Bioinformatics:
E. Chautard, L. Ballut, N. Thierry-Mieg and S. Ricard-Blum.
MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions.
Bioinformatics 2009 25: 690-691. [link]

MatrixDB RSS Feed

Mon, 8 Dec 2008 07:56:00 GMT

The RSS Feed announces MatrixDB news and updates.

BioGrid data on extracellular interactions added on MatrixDB

Mon, 8 Dec 2008 07:56:00 GMT

Due to overlapping datasets of several databases, BioGRID integration adds 95 new interactions.

Interactome construction using Medusa visualization tool

Mon, 8 Dec 2008 07:56:00 GMT

Medusa is an alternative tool to Cytoscape for visualizing interaction networks.

PSI-MI TAB 2.5 format available

Mon, 8 Dec 2008 07:56:00 GMT

MatrixDB literature curation data are available in PSI-MI TAB 2.5 format.