MatrixDB

Tissue specific interactome construction

Tue, 2 Jun 2009 13:40:00 GMT

Tissue specific interaction networks can now be constructed using mRNA expression data (EST profiles) stored in UniGene.
EST (Expressed Sequence Tag) profiles are approximate gene expression inferred from EST count and the cDNA library source.

Curation of Matrix Biology, 2008 release

Fri, 24 Apr 2009 09:49:00 GMT

Papers published in Matrix Biology in 2008 have been curated and implemented into MatrixDB.

MatrixDB publication available

Mon, 19 Jan 2009 17:58:00 GMT

A manuscript describing MatrixDB has been accepted for publication in Bioinformatics:
E. Chautard, L. Ballut, N. Thierry-Mieg and S. Ricard-Blum.
MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions.
Bioinformatics 2009 25: 690-691. [link]

MatrixDB RSS Feed

Mon, 8 Dec 2008 07:56:00 GMT

The RSS Feed announces MatrixDB news and updates.

BioGrid data on extracellular interactions added on MatrixDB

Mon, 8 Dec 2008 07:56:00 GMT

Due to overlapping datasets of several databases, BioGRID integration adds 95 new interactions.

Interactome construction using Medusa visualization tool

Mon, 8 Dec 2008 07:56:00 GMT

Medusa is an alternative tool to Cytoscape for visualizing interaction networks.

PSI-MI TAB 2.5 format available

Mon, 8 Dec 2008 07:56:00 GMT

MatrixDB literature curation data are available in PSI-MI TAB 2.5 format.