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- The extracellular LRR and IgSF neuroreceptor interaction network (Bushell et al. 2008 Genome Res. 18:622-30; Söllner et al. 2009 Genome Biol. 10:R99)
- The elastic fiber interactome (Cain et al. 2009 Mol Cell Proteomics. 8:2715-32)
- The interaction network of endostatin (Faye et al. 2009 J Biol Chem. 284:22041-7)
Based on localization, UniProtKB keyword(s), biomolecule name
NEW: Construction of tissue and disease-specific interaction networks
2283 extracellular matrix interactions including 2095 protein-protein and
169 protein-glycosaminoglycan interactions
in PSI-MI XML or MITAB 2.5 format
MatrixDB is a freely available database focused on interactions established by extracellular proteins and polysaccharides.
MatrixDB takes into account the multimeric nature of the extracellular proteins (e.g. collagens, laminins and thrombospondins are multimers).
MatrixDB is an active member of the International Molecular Exchange (IMEx) consortium and has adopted the PSI-MI standards for annotating and exchanging interaction data.
MatrixDB includes interaction data extracted from the literature by manual curation in our lab, and offers access to relevant data involving extracellular proteins provided by our IMEx partner databases through the PSICQUIC webservice, as well as data from the Human Protein Reference Database.
MatrixDB is in charge of the curation of papers published in Matrix Biology since January 2009.
Prof. Sylvie RICARD-BLUM
Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS - University Lyon 1
69367 Lyon Cedex 07 - France
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modified: Oct 4, 2012