|--HOME--||Browse the database||Interactome Construction||Download||Tutorial - Help|
WORK IN PROGRESS
09/02/2014: we are currently updating the complete MatrixDB content and improving the interface. If something looks broken hopefully we are trying to fix it, but please email us about it to make sure. Thanks for your help and patience.
Display all the molecules in a category
Search by biomolecule name, dataset, PubMed Identifier, free text
- The extracellular LRR and IgSF neuroreceptor interaction network (Bushell et al. 2008 Genome Res. 18:622-30; Söllner et al. 2009 Genome Biol. 10:R99)
- The elastic fiber interactome (Cain et al. 2009 Mol Cell Proteomics. 8:2715-32)
- The interaction network of endostatin (Faye et al. 2009 J Biol Chem. 284:22041-7)
Based on localization, UniProtKB keyword(s), biomolecule name
NEW: Construction of tissue and disease-specific interaction networks
812 extracellular matrix interactions curated by MatrixDB from 1065 individual experiments reported in215 publications.
in PSI-MI XML or MITAB 2.5 format
MatrixDB is a freely available database focused on interactions established by extracellular proteins and polysaccharides.
MatrixDB takes into account the multimeric nature of the extracellular proteins (e.g. collagens, laminins and thrombospondins are multimers).
MatrixDB is an active member of the International Molecular Exchange (IMEx) consortium and has adopted the PSI-MI standards for annotating and exchanging interaction data.
MatrixDB includes interaction data extracted from the literature by manual curation in our lab, and offers access to relevant data involving extracellular proteins provided by our IMEx partner databases through the PSICQUIC webservice, as well as data from the Human Protein Reference Database.
MatrixDB is in charge of the curation of papers published in Matrix Biology since January 2009.
Prof. Sylvie RICARD-BLUM
Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS - University Lyon 1
69367 Lyon Cedex 07 - France
| IBCP Home Page
E-Mail for any questions or comments
modified: Feb 09, 2014